Microbiology

Organisational unit: Unit

  1. Low dose irradiation of thyroid cells reveals a unique transcriptomic and epigenetic signature in RET/PTC-positive cells

    Abouelaradat, K., Monsieurs, P., Anastasov, N., Atkinson, M., Derradji, H., De Meyer, T., Bekaert, S., Van Criekinge, W. & Baatout, S., Mar 2012, In: Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis. 731, 1-2, p. 27-40

    Research output: Contribution to journalArticlepeer-review

  2. Effect of ionic strength on the transport parameters of tritiated water, iodide and H14CO3- in Boom Clay

    Aertsens, M., De Cannière, P., Moors, H., Van Gompel, M., Valcke, E., Mariën, A. & Maes, N., Dec 2009, Scientific Basis for Nuclear Waste Management XXXIII. Symposium Proceedings. Volume 1193. Warrendale, PA, United States, p. 497-504 (Materials Research Society proceedings; no. Volume 1193).

    Research output: Contribution to report/book/conference proceedingsIn-proceedings paperpeer-review

  3. Overview and consistency of migration experiments in clay

    Aertsens, M., De Cannière, P., Lemmens, K., Maes, N. & Moors, H., Jun 2008, In: Physics and Chemistry of the Earth. 33, 14-16, p. 1019-1025

    Research output: Contribution to journalArticlepeer-review

  4. CATCh, an Ensemble Classifier for Chimera Detection in 16S rRNA Sequencing Studies

    Ahmed, M., Saeys, Y., Leys, N., Raes, J. & Monsieurs, P., 1 Mar 2015, In: Applied and Environmental Microbiology. 81, 5, p. 1573-1584

    Research output: Contribution to journalArticlepeer-review

  5. NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads

    Ahmed, M., Leys, N., Raes, J. & Monsieurs, P., 15 Mar 2015, In: BMC Bioinformatics. 16, 88, p. 1-15

    Research output: Contribution to journalArticlepeer-review

  6. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data

    Ahmed, M., Leys, N., Raes, J. & Monsieurs, P., 29 Apr 2016, In: BMC Bioinformatics. 17, p. 192:1-192:11 11 p.

    Research output: Contribution to journalArticlepeer-review

  7. Reconciliation between operational taxonomic units and species boundaries: DynamiC OTU cut-off

    Ahmed, M., Vandamme, P., Props, R., Kerckhof, F-M., Leys, N., Boon, N., Raes, J. & Monsieurs, P., 1 Apr 2017, In: FEMS Microbiology Ecology. 93, p. 1-12 12 p.

    Research output: Contribution to journalArticlepeer-review

  8. Assessing the Impact of Flavophospholipol and Virginiamycin Supplementation on the Broiler Microbiota - a Prospective Controlled Intervention Study

    Ahmed, M., Berkell, M., Xavier, B., De Backer, S., Lammens, C. & Hautekiet, V., 31 Aug 2021, In: mSystems. 6, 4, p. 1-16 16 p., e00381-21.

    Research output: Contribution to journalArticlepeer-review

  9. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data. OCToPUS 16s Metagenomic pipeline

    Ahmed, M. M., Njima, M., Leys, N., Raes, J. & Monsieurs, P., 1 Feb 2017, In: GigaScience. 6, 1-10, p. 1-10 10 p.

    Research output: Contribution to journalArticlepeer-review

  10. Impact of alignment algorithms on 16S metagenomics analysis

    Ahmed, M. M., Shahin, M., Monsieurs, P. & Ramakrishnan, A., 30 Jan 2018, Proceedings of the 8th Cairo International Biomedical Engineering Conference (CIBEC). IEEE - Institute of Electrical and Electronics Engineers, p. 19-21 3 p.

    Research output: Contribution to report/book/conference proceedingsIn-proceedings paperpeer-review

  11. Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans

    Ali, M. M., Provoost, A., Maertens, L., Leys, N., Monsieurs, P., Charlier, D. & Van Houdt, R., 18 Jan 2019, In: Genes. 10, p. 1-22 22 p., 10010063.

    Research output: Contribution to journalArticlepeer-review

  12. DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

    Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In: Frontiers in Microbiology. p. 1-17 17 p., 1635.

    Research output: Contribution to journalArticlepeer-review

  13. First Description of Various Bacteria Resistant to Heavy Metals and Antibiotics Isolated from Polluted Sites in Tunisia

    Ali, M. M., Dziri, O., Ferjani, S., Ahmed, M. M., Boutiba Ben Boubaker, I., Van Houdt, R. & Chouchani, C., 1 Jun 2021, In: Polish Journal of Microbiology. 70, 2, p. 161-174 14 p.

    Research output: Contribution to journalArticlepeer-review

  14. Physiological changes induced in bacteria following pH stress as a model for space research.

    Baatout, S., Leys, N., Hendrickx, L., Dams, A., Mergeay, M. & Van Houdt, R., 15 Feb 2007, In: Acta Astronautica. 60, 4-7, p. 451-459

    Research output: Contribution to journalArticlepeer-review

  15. Molecular investigation of radiation resistant cyanobacterium Arthrospira sp. PCC8005

    Badri, H., Janssen, P. & Mastroleo, F., 23 Jan 2015, Mons, Belgium: UMONS - Université de Mons. 291 p.

    Research output: ThesisDoctoral thesis

  16. Temporal Gene Expression of the Cyanobacterium Arthrospira in Response to Gamma Rays

    Badri, H., Monsieurs, P., Coninx, I., Nauts, R., Wattiez, R. & Leys, N., Aug 2015, In: PLOS ONE. 10, 8, p. 1-29 e0135565.

    Research output: Contribution to journalArticlepeer-review

  17. Molecular investigation of the radiation resistance of edible cyanobacterium Arthrospira sp. PCC 8005

    Badri, H., Monsieurs, P., Coninx, I., Wattiez, R. & Leys, N., Apr 2015, In: Microbiology Open. 4, 2, p. 187-207

    Research output: Contribution to journalArticlepeer-review

  18. Book of abstracts Day of the PhD's October 27, 2016

    Belmans, N., Ali, M. M., Baselet, B., Byloos, B., Mbouombouo Mfossa, A. C., Van Eesbeeck, V., Yadav, A. & Baatout, S., 27 Oct 2016, SCK CEN. (SCK•CEN Reports; no. SCK•CEN BA-0083)

    Research output: Report/bookBook of abstractspeer-review

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