Microbiology

Organisational unit: Unit

  1. Growth and biofilm formation of Cupriavidus metallidurans CH34 on different metallic and polymeric materials used in spaceflight applications

    Abdeljelil, N., Yahia, N. B. M., Landoulsi, A., Chatti, A., Wattiez, R., Van Houdt, R. & Gillan, D., 4 Aug 2022, In: Biofouling. 38, 6, p. 643-655 13 p.

    Research output: Contribution to journalArticlepeer-review

  2. Low dose irradiation of thyroid cells reveals a unique transcriptomic and epigenetic signature in RET/PTC-positive cells

    Abouelaradat, K., Monsieurs, P., Anastasov, N., Atkinson, M., Derradji, H., De Meyer, T., Bekaert, S., Van Criekinge, W. & Baatout, S., Mar 2012, In: Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis. 731, 1-2, p. 27-40

    Research output: Contribution to journalArticlepeer-review

  3. Effect of ionic strength on the transport parameters of tritiated water, iodide and H14CO3- in Boom Clay

    Aertsens, M., De Cannière, P., Moors, H., Van Gompel, M., Valcke, E., Mariën, A. & Maes, N., Dec 2009, Scientific Basis for Nuclear Waste Management XXXIII. Symposium Proceedings. Volume 1193. Warrendale, PA, United States, p. 497-504 (Materials Research Society proceedings; no. Volume 1193).

    Research output: Contribution to report/book/conference proceedingsIn-proceedings paperpeer-review

  4. Overview and consistency of migration experiments in clay

    Aertsens, M., De Cannière, P., Lemmens, K., Maes, N. & Moors, H., Jun 2008, In: Physics and Chemistry of the Earth. 33, 14-16, p. 1019-1025

    Research output: Contribution to journalArticlepeer-review

  5. CATCh, an Ensemble Classifier for Chimera Detection in 16S rRNA Sequencing Studies

    Ahmed, M., Saeys, Y., Leys, N., Raes, J. & Monsieurs, P., 1 Mar 2015, In: Applied and Environmental Microbiology. 81, 5, p. 1573-1584

    Research output: Contribution to journalArticlepeer-review

  6. NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads

    Ahmed, M., Leys, N., Raes, J. & Monsieurs, P., 15 Mar 2015, In: BMC Bioinformatics. 16, 88, p. 1-15

    Research output: Contribution to journalArticlepeer-review

  7. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data

    Ahmed, M., Leys, N., Raes, J. & Monsieurs, P., 29 Apr 2016, In: BMC Bioinformatics. 17, p. 192:1-192:11 11 p.

    Research output: Contribution to journalArticlepeer-review

  8. Reconciliation between operational taxonomic units and species boundaries: DynamiC OTU cut-off

    Ahmed, M., Vandamme, P., Props, R., Kerckhof, F-M., Leys, N., Boon, N., Raes, J. & Monsieurs, P., 1 Apr 2017, In: FEMS Microbiology Ecology. 93, p. 1-12 12 p.

    Research output: Contribution to journalArticlepeer-review

  9. Assessing the Impact of Flavophospholipol and Virginiamycin Supplementation on the Broiler Microbiota - a Prospective Controlled Intervention Study

    Ahmed, M., Berkell, M., Xavier, B., De Backer, S., Lammens, C. & Hautekiet, V., 31 Aug 2021, In: mSystems. 6, 4, p. 1-16 16 p., e00381-21.

    Research output: Contribution to journalArticlepeer-review

  10. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data. OCToPUS 16s Metagenomic pipeline

    Ahmed, M. M., Njima, M., Leys, N., Raes, J. & Monsieurs, P., 1 Feb 2017, In: GigaScience. 6, 1-10, p. 1-10 10 p.

    Research output: Contribution to journalArticlepeer-review

  11. Impact of alignment algorithms on 16S metagenomics analysis

    Ahmed, M. M., Shahin, M., Monsieurs, P. & Ramakrishnan, A., 30 Jan 2018, Proceedings of the 8th Cairo International Biomedical Engineering Conference (CIBEC). IEEE - Institute of Electrical and Electronics Engineers, p. 19-21 3 p.

    Research output: Contribution to report/book/conference proceedingsIn-proceedings paperpeer-review

  12. Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans

    Ali, M. M., Provoost, A., Maertens, L., Leys, N., Monsieurs, P., Charlier, D. & Van Houdt, R., 18 Jan 2019, In: Genes. 10, p. 1-22 22 p., 10010063.

    Research output: Contribution to journalArticlepeer-review

  13. Novel metal resistance mechanisms of Cupriavidus metallidurans

    Ali, M. M. & Van Houdt, R., 18 Nov 2019, 207 p.

    Research output: ThesisDoctoral thesis

  14. DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

    Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In: Frontiers in Microbiology. p. 1-17 17 p., 1635.

    Research output: Contribution to journalArticlepeer-review

  15. First Description of Various Bacteria Resistant to Heavy Metals and Antibiotics Isolated from Polluted Sites in Tunisia

    Ali, M. M., Dziri, O., Ferjani, S., Ahmed, M. M., Boutiba Ben Boubaker, I., Van Houdt, R. & Chouchani, C., 1 Jun 2021, In: Polish Journal of Microbiology. 70, 2, p. 161-174 14 p.

    Research output: Contribution to journalArticlepeer-review

  16. Physiological changes induced in bacteria following pH stress as a model for space research.

    Baatout, S., Leys, N., Hendrickx, L., Dams, A., Mergeay, M. & Van Houdt, R., 15 Feb 2007, In: Acta Astronautica. 60, 4-7, p. 451-459

    Research output: Contribution to journalArticlepeer-review

  17. Molecular investigation of radiation resistant cyanobacterium Arthrospira sp. PCC8005

    Badri, H., Janssen, P. & Mastroleo, F., 23 Jan 2015, Mons, Belgium: UMONS - Université de Mons. 291 p.

    Research output: ThesisDoctoral thesis

  18. Temporal Gene Expression of the Cyanobacterium Arthrospira in Response to Gamma Rays

    Badri, H., Monsieurs, P., Coninx, I., Nauts, R., Wattiez, R. & Leys, N., Aug 2015, In: PLOS ONE. 10, 8, p. 1-29 e0135565.

    Research output: Contribution to journalArticlepeer-review

  19. Molecular investigation of the radiation resistance of edible cyanobacterium Arthrospira sp. PCC 8005

    Badri, H., Monsieurs, P., Coninx, I., Wattiez, R. & Leys, N., Apr 2015, In: Microbiology Open. 4, 2, p. 187-207

    Research output: Contribution to journalArticlepeer-review

  20. Investigations on the potential radio-protective properties of edible Cyanobacterium during pelvic irradiation in a mouse model

    Beeck, W. V., Verslegers, M. & Mastroleo, F., 24 Jun 2016, 76 p.

    Research output: ThesisMaster's thesis

  21. Book of abstracts Day of the PhD's October 27, 2016

    Belmans, N., Ali, M. M., Baselet, B., Byloos, B., Mbouombouo Mfossa, A. C., Van Eesbeeck, V., Yadav, A. & Baatout, S., 27 Oct 2016, SCK CEN. (SCK•CEN Reports; no. SCK•CEN BA-0083)

    Research output: Report/bookBook of abstractspeer-review

  22. First report of cross resistance to silver and antibiotics in Klebsiella pneumoniae isolated from patients and polluted water in Tunisia

    Ben Miloud, S., Ali, M. M., Boutiba Ben Boubaker, I., Van Houdt, R. & Chouchani, C., May 2021, In: Water and environment journal. 35, 2, p. 730-739 10 p.

    Research output: Contribution to journalArticlepeer-review

  23. Microbiota-based markers predictive of development of Clostridioides difficile infection

    Berkell, M., Ahmed, M., Xavier, B., van Werkhoven, C. H., Monsieurs, P., Lammens, C., Ducher, A., Vehreschild, M. J. G. T., Goossens, H., De Gunzburg, J., Bonten, M. J. M. & Malhotra-kumar, S., 14 Apr 2021, In: Nature Communications. 12, p. 1-14 14 p., 2241.

    Research output: Contribution to journalArticlepeer-review

  24. A molecular toolbox to estimate the number and diversity of Variovorax in the environment: application in soils treated with the phenylurea herbicide linuron

    Bers, K., Sniegowski, K., Albers, P., Breugelmans, P., Hendrickx, L., De Mot, R. & Springael, D., 1 Apr 2011, In: FEMS Microbiology Ecology. 76, 1, p. 14-25 12 p.

    Research output: Contribution to journalArticlepeer-review

  25. Structure and Metal binding Characterization of the C-terminal Mellochaperone Domain of Membrane Fusion Protein SilB from Cupriavidus metallidurans CH34

    Bersch, B., Derfoufi, K., de Angelis, F., Auquier, V., Ngonlong Ekende, E., Mergeay, M., Ruysschaert, J-M., Vandenbussche, G. & Monsieurs, P., 7 Feb 2011, In: Biochemistry. 50, 12, p. 2194-2204

    Research output: Contribution to journalArticlepeer-review

  26. Molecular Structure and Metal-binding Properties of the Periplasmic CopK Protein Expressed in Cupriavidus metallidurans CH34 During Copper Challenge

    Bersch, B., Favier, A., Schanda, P., van Aelst, S., Vallaeys, T., Covès, J., Mergeay, M., Wattiez, R. & Van Houdt, R., 4 Jul 2008, In: Journal of Molecular Biology. 380, 2, p. 386-403

    Research output: Contribution to journalArticlepeer-review

  27. BIOSMHARS: Biocontamination specific modelling in habitats related to space

    Berthier, A., Leys, N., Van Houdt, R., Tikhomirov, A., Novikova, N., Ilyin, V., Kulmala, I., Lehtimäki, M., Kokkonen, E., Pasanen, P., Abaibou, H. & Mastroleo, F., Jul 2012, Let’s Embrace Space. 1 ed. Luxembourg, Luxembourg: EC - European Commission, Vol. 2. p. 278-284 (Let's Embrace Space; no. volume 2).

    Research output: Contribution to report/book/conference proceedingsChapterpeer-review

  28. Bacillus thuringiensis conjugation in simulated microgravity

    Beuls, E., Van Houdt, R., Leys, N., Dijkstra, C., Larkin, O., Mahillon, J. & Mijnendonckx, K., 21 Oct 2009, In: Astrobiology. 9, 8, p. 797-805

    Research output: Contribution to journalArticlepeer-review

  29. Impact of the electron donor on in situ microbial nitrate reduction in Opalinus Clay: results from the Mont Terri rock laboratory (Switzerland)

    Bleyen, N., Smets, S., Small, J., Moors, H., Leys, N., Albrecht, A., De Cannière, P., Schwyn, B., Wittebroodt, C. & Valcke, E., 1 Apr 2017, In: Swiss Journal of Geosciences. 110, 1, p. 355-374 20 p.

    Research output: Contribution to journalArticlepeer-review

  30. Biodegradability of dissolved organic matter in Boom Clay pore water under nitrate-reducing conditions: Effect of additional C and P sources

    Bleyen, N., Hendrix, K., Moors, H., Durce, D., Vasile, M. & Valcke, E., 2 May 2018, In: Applied Geochemistry. 92, p. 45-58 14 p.

    Research output: Contribution to journalArticlepeer-review

  31. Ex and in situ reactivity and sorption of selenium in Opalinus clay in the presence of a selenium reducing microbial community

    Bleyen, N., Small, J., Mijnendonckx, K., Hendrix, K., Albrecht, A., De Cannière, P., Surkova, M., Wittebroodt, C. & Valcke, E., 13 Jul 2021, In: Minerals. 11, 757, p. 1-33 33 p., 11070757.

    Research output: Contribution to journalArticlepeer-review

  32. Gravitational Cell Biology

    Boonstra, J., Bradamante, S., Colige, A. C., Hemmersbach, R., Lambert, C. A., Leys, N., van Loon, J. J. W. A., Nusgens, B. V. & Mastroleo, F., Dec 2011, Laboratory Science with Space Data. 1 ed. Heidelberg, Germany: Springer, Vol. 1. p. 107-112

    Research output: Contribution to report/book/conference proceedingsChapterpeer-review

  33. Conjugative transfer of broad host range plasmids to an acidobacterial strain, Edaphobacter aggregans

    Bouhajja, E., Efthymiopoulus, T., George, I. F., Moreels, D., Van Houdt, R., Mergeay, M. & Agathos, S. N., 22 Jan 2016, In: Journal of Biotechnology. 221, p. 107-113

    Research output: Contribution to journalArticlepeer-review

  34. Loss of Furin in β cells Induces an mTORC1-ATF4 Anabolic Pathway that Leads to β cell Dysfunction

    Brouwers, B., Coppola, I., Vints, K., Dislich, B., Van Lommel, L., Segers, C., Gounko, N. V., Thorrez, L., Schuit, F., Lichtenthaler, S. F., Estall, J. L., Declercq, J., Ramos-Molina, B. & Creemers, J. W. M., 4 Dec 2020, In: Diabetes. 70, 2, p. 492-503 12 p., db200474.

    Research output: Contribution to journalArticlepeer-review

  35. Reevaluating multicolor flow cytometry to assess microbial viability

    Buysschaert, B., Byloos, B., Leys, N., Van Houdt, R. & Boon, N., 1 Sep 2016, In: Applied Microbiology and Biotechnology. 100, p. 9037-9051 15 p.

    Research output: Contribution to journalArticlepeer-review

  36. The Impact of Space Flight on Survival and Interaction of Cupriavidus metallidurans CH34 with Basalt, a Volcanic Moon Analog Rock

    Byloos, B., Coninx, I., Van Hoey, O., Van Houdt, R. & Leys, N., 28 Apr 2017, In: Frontiers in Microbiology. 8, p. 1-14 14 p., 671.

    Research output: Contribution to journalArticlepeer-review

  37. The Ability of Basalt to Leach Nutrients and Support Growth of Cupriavidus metallidurans CH34 Depends on Basalt Composition and Element Release

    Byloos, B., Maan, H., Van Houdt, R., Boon, N. & Leys, N., 15 Feb 2018, In: Geomicrobiology Journal. 35, 5, p. 438-446 8 p.

    Research output: Contribution to journalArticlepeer-review

  38. The interaction of bacteria with volcanic rocks on Earth and in Space

    Byloos, B., Leys, N. & Van Houdt, R., 27 Sep 2017, 243 p.

    Research output: ThesisDoctoral thesis

  39. Characterization of the bacterial communities on recent Icelandic volcanic deposits of different ages

    Byloos, B., Monsieurs, P., Ahmed, M., Leys, N., Boon, N. & Van Houdt, R., 24 Sep 2018, In: BMC Microbiology. 11 p., 18:122.

    Research output: Contribution to journalArticlepeer-review

  40. Genome-wide transcriptional analysis suggests hydrogenase- and nitrogenase-mediated hydrogen production in Clostridium butyricum CWBI 1009

    Calusinska, M., Hamilton, C., Monsieurs, P., Mathy, G., Leys, N., Franck, F., Joris, B., Thonart, P., Hiligsmann, S., Wilmotte, A., Van Houdt, R. & Moors, H., 22 Feb 2015, In: Biotechnology for Biofuels. 8, 27, p. 1-16

    Research output: Contribution to journalArticlepeer-review

  41. Expression of a Novel P22 ORFan Gene Reveals the Phage Carrier State in Salmonella Typhimurium

    Cenens, W., Mebrhatu, M. T., Makumi, A., Ceyssens, P-J., Lavigne, R., Van Houdt, R., Taddei, F. & Aertsen, A., 14 Feb 2013, In: PLOS Genetics. 9, 2, p. 1003269-1

    Research output: Contribution to journalArticlepeer-review

  42. Evolutionary Divergence of Brain-specific Precursor miRNAs Drives Efficient Processing and Production of Mature miRNAs in Human

    Chakroborty, S., Islam, M. R., Ali, M. M. & Nabi, A. H. M. N., 10 Nov 2018, In: Neuroscience. 392, p. 141-159 19 p.

    Research output: Contribution to journalArticlepeer-review

  43. A “Refined Hydrogen Rule” and a “Refined Hydrogen and Halogen Rule” for Organic Molecules

    Claesen, J., Valkenborg, D. & Burzykowski, T., 2 Jan 2020, In: Journal of Mass Spectrometry. 31, 1, p. 132-136 5 p.

    Research output: Contribution to journalArticlepeer-review

  44. Predicting the number of sulfur atoms in peptides and small proteins based on the observed aggregated isotope distribution

    Claesen, J., Valkenborg, D. & Burzykowski, T., 8 Jul 2021, In: Rapid Communications in Mass Spectrometry. 35, p. 1-8 8 p., e9162.

    Research output: Contribution to journalArticlepeer-review

  45. Space station biomining experiment demonstrates rare earth element extraction in microgravity and Mars gravity

    Cockell, C. S., Santomartino, R., Finster, K., Waajen, A. C., Eades, L. J., Moeller, R., Rettberg, P., Fuchs, F., Van Houdt, R., Leys, N., Coninx, I., Hatton, J., Parmitano, L., Krause, J., Koehler, A., Caplin, N., Zuijderduijn, L., Demets, R., Mariani, A., Pellari, S. S. & 9 others, Carubia, F., Luciani, G., Balsamo, M., Zolesi, V., Doswald-Winkler, J., Herova, M., Rattenbacher, B., Wadsworth, J. & Everroad, C. R., 10 Nov 2020, In: Nature Communications. 11, p. 1-11 11 p., 5523.

    Research output: Contribution to journalArticlepeer-review

  46. Microbially-Enhanced Vanadium Mining and Bioremediation Under Micro- and Mars Gravity on the International Space Station

    Cockell, C. S., Santomartino, R., Finster, K., Waajen, A. C., Nicholson, N., Loudon, C-M., Eades, L. J., Moeller, R., Rettberg, P., Fuchs, F., Van Houdt, R., Leys, N., Coninx, I., Hatton, J., Parmitano, L., Krause, J., Koehler, A., Caplin, N., Zuijderduijn, L., Mariani, A. & 15 others, Pellari, S. S., Carubia, F., Luciani, G., Balsamo, M., Zolesi, V., Zolesi, V., Ochoa, J., Sen, P., Watt, J. A. J., Doswald-Winkler, J., Herova, M., Rattenbacher, B., Wadsworth, J., Everroad, C. R. & Demets, R., 1 Apr 2021, In: Frontiers in Microbiology. p. 1-15 15 p.

    Research output: Contribution to journalArticlepeer-review

  47. Construction and phenotypic characterization of M68, an RruI quorum sensing knockout mutant of the photosynthetic alphaproteobacterium Rhodospirillum rubrum

    Condori Catachura, S., Leys, N. & Mastroleo, F., 16 Mar 2016, In: Microbiology. 167, p. 380-392

    Research output: Contribution to journalArticlepeer-review

  48. Quorum sensing in life support systems: The MELiSSA loop

    Condori Catachura, S., Leys, N. & Mastroleo, F., 12 Aug 2018, Quorum Sensing and its Biotechnological Applications. Springer Singapore, p. 249-260 12 p.

    Research output: Contribution to report/book/conference proceedingsChapterpeer-review

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