Microbiology

Organisational unit: Unit

  1. Article › Research
  2. Cupriavidus metallidurans strains with different mobilomes and from distinct environments have comparable phenomes

    Van Houdt, R., Provoost, A., Van Assche, A., Leys, N., Lievens, B., Mijnendonckx, K. & Monsieurs, P., 18 Oct 2018, In: Genes. 9, 10, 23 p., 507.

    Research output: Contribution to journalArticlepeer-review

  3. A “Refined Hydrogen Rule” and a “Refined Hydrogen and Halogen Rule” for Organic Molecules

    Claesen, J., Valkenborg, D. & Burzykowski, T., 2 Jan 2020, In: Journal of Mass Spectrometry. 31, 1, p. 132-136 5 p.

    Research output: Contribution to journalArticlepeer-review

  4. A Conceptual Framework for Abundance Estimation of Genomic Targets in the Presence of Ambiguous Short Sequencing Reads

    Górzcak, K., Claesen, J. & Burzykowski, T., 31 Dec 2019, In: Journal of Computational Biology. 27, 0, p. 1-16 16 p.

    Research output: Contribution to journalArticlepeer-review

  5. A molecular toolbox to estimate the number and diversity of Variovorax in the environment: application in soils treated with the phenylurea herbicide linuron

    Bers, K., Sniegowski, K., Albers, P., Breugelmans, P., Hendrickx, L., De Mot, R. & Springael, D., 1 Apr 2011, In: FEMS Microbiology Ecology. 76, 1, p. 14-25 12 p.

    Research output: Contribution to journalArticlepeer-review

  6. A PKS/NRPS/FAS Hybrid Gene Cluster from Serratia plymuthica RVH1 Encoding the Biosynthesis of Three Broad Spectrum, Zeamine-Related Antibiotics

    Masschelein, J., Mattheus, W., Gao, L-J., Moons, P., Van Houdt, R., Uytterhoeven, B., Lamberigts, C., Lescinier, E., Rozenski, J., Herdewijn, P., Aertsen, A., Michiels, C. & Lavigne, R., 17 Jan 2013, In: PLOS ONE. 8, 1, p. 54143-54143

    Research output: Contribution to journalArticlepeer-review

  7. Absolute quantification of microbial taxon abundances.

    Props, R., Monsieurs, P., Kerckhof, FM., Rubbens, P., De, V. J., Hernandez, S. E., Waegeman, J., Hammes, F. & Boon, N., 1 Feb 2017, In: The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 11, February 2017, p. 584-587 4 p.

    Research output: Contribution to journalArticlepeer-review

  8. Accurate prediction of metagenome‑assembled genome completeness by MAGISTA, a random forest model built on alignment‑free intra‑bin statistics

    Goussarov, G., Claesen, J., Ahmed, M., Leys, N., Vandamme, P. & Van Houdt, R., 5 Mar 2021, In: Environmental Microbiome. 17, 9, p. 1-13 13 p.

    Research output: Contribution to journalArticlepeer-review

  9. Adaptation of Cupriavidus metallidurans CH34 to Toxic Zinc Concentrations Involves an Uncharacterized ABC-Type Transporter

    Van Houdt, R., Vandecraen, J., Leys, N., Monsieurs, P. & Aertsen, A., 2 Feb 2021, In: Microorganisms. 9, 2, p. 1-14 14 p., 9020309.

    Research output: Contribution to journalArticlepeer-review

  10. Alveolar epithelium protects macrophages from quorum sensing-induced cytotoxicity in a three-dimensional co-culture model

    Crabbé, A., Sarker, S., Van Houdt, R., Ott, M., Leys, N., Cornelis, P., Nickerson, C. & Monsieurs, P., Mar 2011, In: Cellular Microbiology. 13, 3, p. 469-481

    Research output: Contribution to journalArticlepeer-review

  11. An efficient DNA isolation protocol for filamentous cyanobacteria of the genus Arthrospira

    Morin, N., Vallaeys, T., Hendrickx, L., Leys, N. & Wilmotte, A., 4 Jan 2010, In: Journal of Microbiological Methods. 80, 2, p. 148-154

    Research output: Contribution to journalArticlepeer-review

  12. Antimicrobial efficacy against Pseudomonas aeruginosa biofilm formation in a three-dimensional lung epithelial model and the influence of fetal bovine serum

    Crabbé, A., Liu, Y., Matthijs, N., Rigole, P., De La Fuente-Nùñez, C., Davis, R., Ledesma, M. A., Sarker, S., Van Houdt, R., Hancock, R. E. W., Coenye, T. & Nickerson, C. A., 3 Mar 2017, In: Scientific Reports. 7, p. 1-13 13 p., 43321.

    Research output: Contribution to journalArticlepeer-review

  13. Antimicrobial silver: uses, toxicity and potential for resistance

    Mijnendonckx, K., Leys, N., Mahillon, J., Silver, S. & Van Houdt, R., Jun 2013, In: Biometals. 26, 3, p. 1-15

    Research output: Contribution to journalArticlepeer-review

  14. Arthrospira - a multitalented microalga

    Janssen, P., Monsieurs, P., Vandenhove, H. & Massaut, V., 30 Apr 2014, In: International Innovation. 134, p. 58-60

    Research output: Contribution to journalArticlepeer-review

  15. Assessing the Impact of Flavophospholipol and Virginiamycin Supplementation on the Broiler Microbiota - a Prospective Controlled Intervention Study

    Ahmed, M., Berkell, M., Xavier, B., De Backer, S., Lammens, C. & Hautekiet, V., 31 Aug 2021, In: mSystems. 6, 4, p. 1-16 16 p., e00381-21.

    Research output: Contribution to journalArticlepeer-review

  16. Bacillus thuringiensis conjugation in simulated microgravity

    Beuls, E., Van Houdt, R., Leys, N., Dijkstra, C., Larkin, O., Mahillon, J. & Mijnendonckx, K., 21 Oct 2009, In: Astrobiology. 9, 8, p. 797-805

    Research output: Contribution to journalArticlepeer-review

  17. BacPipe: A rapid, user-friendly whole genome sequencing pipeline for clinical diagnostic bacteriology

    Xavier, B. B., Ahmed, M., Bolzan, M., Ribeiro-Gonçalves, B., Alako, B. T. F., Harrison, P., Lammens, C., Kumar-Singh, S., Goossens, H., Carriço, J. A., Cochrane, G. R. & Malhotra-kumar, S., 9 Dec 2019, In: iScience. 23, 100769, p. 1-28 28 p., 100767.

    Research output: Contribution to journalArticlepeer-review

  18. Biodegradability of dissolved organic matter in Boom Clay pore water under nitrate-reducing conditions: Effect of additional C and P sources

    Bleyen, N., Hendrix, K., Moors, H., Durce, D., Vasile, M. & Valcke, E., 2 May 2018, In: Applied Geochemistry. 92, p. 45-58 14 p.

    Research output: Contribution to journalArticlepeer-review

  19. Biofilm formation and the food industry, a focus on the bacterial outer surface

    Van Houdt, R. & Michiels, C. W., Oct 2010, In: Journal of Applied Microbiology. 109, 4, p. 1117-1131

    Research output: Contribution to journalArticlepeer-review

  20. Biological removal of 17a-ethinylestradiol by a nitrifier enrichment culture in a membrane bioreactor

    De Gusseme, B., Pycke, B., Hennebel, T., Marcoen, A., Vlaeminck, S. E., Noppe, H., Boon, N., Verstraete, W. & Van Houdt, R., Feb 2009, In: Water Research. 43, 9, p. 2493-2503

    Research output: Contribution to journalArticlepeer-review

  21. BioRock: new experiments and hardware to investigate microbe–mineral interactions in space

    Loudon, C-M., Nicholson, N., Finster, K., Leys, N., Byloos, B., Van Houdt, R., Rettberg, P., Moeller, R., Fuchs, F., Demets, R., Krause, J., Vukich, M., Mariani, A. & Cockell, C., 1 Oct 2018, In: International Journal of Astrobiology. 17, 4, p. 303-313 11 p.

    Research output: Contribution to journalArticlepeer-review

  22. Boom Clay pore water geochemistry at the Mol site - Experimental data as determined by in situ sampling of the piezometers

    Honty, M., Frederickx, L., Wang, L., De Craen, M., Thomas, P., Moors, H. & Jacops, E., 1 Jan 2022, In: Applied Geochemistry. 136, p. 1-19 19 p., 105156.

    Research output: Contribution to journalArticlepeer-review

  23. CATCh, an Ensemble Classifier for Chimera Detection in 16S rRNA Sequencing Studies

    Ahmed, M., Saeys, Y., Leys, N., Raes, J. & Monsieurs, P., 1 Mar 2015, In: Applied and Environmental Microbiology. 81, 5, p. 1573-1584

    Research output: Contribution to journalArticlepeer-review

  24. Changes in DNA Methylation in Arabidopsis thaliana Plants Exposed Over Multiple Generations to Gamma Radiation

    Laanen, P., Saenen, E., Ahmed, M. M., van de Walle, J., Van Hees, M., Nauts, R., Van Nieuwerburgh, F., Voorspoels, S., Jacobs, G., Cuypers, A. & Horemans, N., 31 Mar 2021, In: Frontiers in Plant Science. 12, p. 1-17 17 p., 611783.

    Research output: Contribution to journalArticlepeer-review

  25. Characteristics of the copper‐induced viable‐but‐non‐culturable state in bacteria

    Maertens, L., Matroule, J-Y. & Van Houdt, R., 5 Feb 2021, In: World Journal of Microbiology and Biotechnology. 37, 37, p. 1-9 9 p.

    Research output: Contribution to journalArticlepeer-review

  26. Characterization of culturable Paenibacillus spp. from the snow surface on the high Antarctic Plateau (DOME C) and their dissemination in the Concordia research station

    Van Houdt, R., Deghorain, M., Vermeersch, M., Provoost, A., Lo Guidice, A., Leys, N., Perez-Morga, D., Van Melderen, L., Michaud, L. & Moors, H., Jul 2013, In: Extremophiles. 17, 4, p. 565-573

    Research output: Contribution to journalArticlepeer-review

  27. Characterization of the bacterial communities on recent Icelandic volcanic deposits of different ages

    Byloos, B., Monsieurs, P., Ahmed, M., Leys, N., Boon, N. & Van Houdt, R., 24 Sep 2018, In: BMC Microbiology. 11 p., 18:122.

    Research output: Contribution to journalArticlepeer-review

  28. Characterization of the Survival Ability of Cupriavidus metallidurans and Ralstonia pickettii from Space-Related Environments

    Mijnendonckx, K., Provoost, A., Ott, C. M., Venkateswaran, K., Mahillon, J., Leys, N. & Van Houdt, R., Feb 2013, In: Microbial Ecology. 65, 2, p. 347-360

    Research output: Contribution to journalArticlepeer-review

  29. Characterization of Triclosan-Resistant Mutants Reveals Multiple Antimicrobial Resistance Mechanisms in Rhodospirillum rubrum S1H

    Pycke, B., Crabbé, A., Verstraete, W. & Leys, N., 1 May 2010, In: Applied and Environmental Microbiology. 76, 10, p. 3116-3123

    Research output: Contribution to journalArticlepeer-review

  30. Comparison of Antibiotic Resistance, Biofilm Formation and Conjugative Transfer of Staphylococcus and Enterococcus Isolates from International Space Station and Antarctic Research Station Concordia

    Katarzyna, S., Arends, K., Rogowski, K. M., Fürch, S., Prescha, K., Sakinc, T., Van Houdt, R., Werner, G. & Grohmann, E., Apr 2013, In: Microbial Ecology. 65, 3, p. 638-651

    Research output: Contribution to journalArticlepeer-review

  31. Conjugative transfer of broad host range plasmids to an acidobacterial strain, Edaphobacter aggregans

    Bouhajja, E., Efthymiopoulus, T., George, I. F., Moreels, D., Van Houdt, R., Mergeay, M. & Agathos, S. N., 22 Jan 2016, In: Journal of Biotechnology. 221, p. 107-113

    Research output: Contribution to journalArticlepeer-review

  32. Copper resistance mediates long-term survival of Cupriavidus metallidurans in wet contact with metallic copper

    Maertens, L., Coninx, I., Claesen, J., Leys, N., Matroule, J-Y. & Van Houdt, R., 3 Jun 2020, In: Frontiers in Microbiology. p. 1-11 11 p.

    Research output: Contribution to journalArticlepeer-review

  33. Cupriavidus metallidurans CH34, a historical perspective on its discovery, characterization and metal resistance

    Mergeay, M. & Van Houdt, R., 1 Feb 2021, In: FEMS Microbiology Ecology. 97, 2, p. 1-8 8 p., fiaa247.

    Research output: Contribution to journalArticlepeer-review

  34. Cupriavidus metallidurans NA4 actively forms polyhydroxybutyrate-associated uranium-phosphate precipitates

    Rogiers, T., Merroun, M. L., Williamson, A., Leys, N., Van Houdt, R., Boon, N. & Mijnendonckx, K., 5 Jan 2022, In: Journal of Hazardous Materials. 421, p. 1-10 10 p., 126737.

    Research output: Contribution to journalArticlepeer-review

  35. Cyclical patterns affect microbial dynamics in the water basin of a nuclear research reactor

    Van Eesbeeck, V., Props, R., Ahmed, M. M., Petit, P., Rivasseau, C., Armengaud, J., Monsieur, P., Mahillon, J. & Leys, N., 15 Oct 2021, In: Frontiers in Microbiology. p. 1-11 11 p., 744115.

    Research output: Contribution to journalArticlepeer-review

  36. Deuteros 2.0: peptide-level significance testing of data from hydrogen deuterium exchange mass spectrometry

    Lau, A. M., Claesen, J., Hansen, K. & Politis, A., 8 Jan 2021, In: Bioinformatics. 37, 2, p. 270-272 3 p.

    Research output: Contribution to journalArticlepeer-review

  37. Differential proteomic analysis using isotope-coded protein-labeling strategies: Comparison, improvements and application to simulated microgravity effect on Cupriavidus metallidurans CH34

    Leroy, B., Rosier, C., Erculisse, V., Leys, N., Mergeay, M. & Wattiez, R., 18 Mar 2010, In: Proteomics. 10, 12, p. 2281-2291

    Research output: Contribution to journalArticlepeer-review

  38. Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions

    Crabbé, A., Leroy, B., Wattiez, R., Aertsen, A., Leys, N., Cornelis, P., Van Houdt, R. & Mastroleo, F., Nov 2012, In: BMC Microbiology. 12, p. 282-287

    Research output: Contribution to journalArticlepeer-review

  39. Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core

    Petit, P., Pible, O., Van Eesbeeck, V., Alban, C., Steinmetz, G., Ahmed, M., Monsieurs, P., Armengaud, J. & Rivasseau, C., 25 Nov 2020, In: Microorganisms. 8, 12, p. 1-12 12 p., 8121857.

    Research output: Contribution to journalArticlepeer-review

  40. Distribution of Nitrosomonas europaea and Nitrobacter winogradskyi in an autotrophic nitrifying biofilm reactor as depicted by molecular analyses and mathematical modelling

    Montras, A., Pycke, B., Boon, N., Godia, F., Mergeay, M., Hendrickx, L. & Pérez, J., Mar 2008, In: Water Research. 42, 6-7, p. 1700-1714

    Research output: Contribution to journalArticlepeer-review

  41. DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

    Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In: Frontiers in Microbiology. p. 1-17 17 p., 1635.

    Research output: Contribution to journalArticlepeer-review

  42. Draft Genome Sequences of Ralstonia pickettii Strains SSH4 and CW2, Isolated from Space Equipment.

    Monsieurs, P., Mijnendonckx, K., Provoost, A., Venkateswaran, K., Ott, M., Leys, N., Van Houdt, R., Moors, H. & Janssen, P., 4 Sep 2014, In: Genome Announcements. 2, 5, p. e0088714-e0088714

    Research output: Contribution to journalArticlepeer-review

  43. Effect of Applying Struvite and Organic N as Recovered Fertilizers on the Rhizosphere Dynamics and Cultivation of Lupine (Lupinus angustifolius)

    Robles-Aguilar, A. A., Grunert, O., Hernandez-Sanabria, E., Ahmed, M. M., Meers, E., Boon, N. & Jablonowski, N. D., 1 Nov 2020, In: Frontiers in Plant Science. p. 1-17 17 p., 572741.

    Research output: Contribution to journalArticlepeer-review

  44. Effect of microgravity & space radiation on microbes

    Senatore, G., Mastroleo, F., Leys, N. & Mauriello, G., 10 May 2018, In: Future Microbiology. 13, 7, p. 831–847 18 p.

    Research output: Contribution to journalArticlepeer-review

  45. Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung

    Dingemans, J., Monsieurs, P., Yu, S-H., Crabbé, A., Förstner, K. U., Malfroot, A., Cornelis, P. & Van Houdt, R., 2 Aug 2016, In: mBio. 7, 4, 16 p., e00813-16.

    Research output: Contribution to journalArticlepeer-review

  46. Environmental conditions modulate the transcriptomic response of both caulobacter crescentus morphotypes to Cu stress

    Maertens, L., Cherry, P., Tilquin, F., Van Houdt, R. & Matroule, J-Y., 21 May 2021, In: Microorganisms. 9, 6, p. 1-25 25 p., 9061116.

    Research output: Contribution to journalArticlepeer-review

  47. Evaluation of the Airborne Bacterial Population in the Periodically Confined Antarctic Base Concordia

    Van Houdt, R., De Boever, P., Coninx, I., Le Calvez, C., Dicasillati, R., Mahillon, J., Mergeay, M., Leys, N., Moors, M. & Monsieurs, P., May 2009, In: Microbial Ecology. 57, 4, p. 640-648

    Research output: Contribution to journalArticlepeer-review

  48. Evidence and characteristics of a diverse and metabolically active microbial community in deep subsurface clay borehole water

    Wouters, K., Moors, H., Boven, P. & Leys, N., Dec 2013, In: FEMS Microbiology Ecology. 86, 3, p. 458-473

    Research output: Contribution to journalArticlepeer-review

  49. Evolutionary Divergence of Brain-specific Precursor miRNAs Drives Efficient Processing and Production of Mature miRNAs in Human

    Chakroborty, S., Islam, M. R., Ali, M. M. & Nabi, A. H. M. N., 10 Nov 2018, In: Neuroscience. 392, p. 141-159 19 p.

    Research output: Contribution to journalArticlepeer-review

Previous 1 2 3 4 5 Next

ID: 23275