Microbiology

Organisational unit: Unit

  1. Article › Research
  2. Cupriavidus metallidurans strains with different mobilomes and from distinct environments have comparable phenomes

    Van Houdt, R., Provoost, A., Van Assche, A., Leys, N., Lievens, B., Mijnendonckx, K. & Monsieurs, P., 18 Oct 2018, In: Genes. 9, 10, 23 p., 507.

    Research output: Contribution to journalArticlepeer-review

  3. A “Refined Hydrogen Rule” and a “Refined Hydrogen and Halogen Rule” for Organic Molecules

    Claesen, J., Valkenborg, D. & Burzykowski, T., 2 Jan 2020, In: Journal of Mass Spectrometry. 31, 1, p. 132-136 5 p.

    Research output: Contribution to journalArticlepeer-review

  4. A Conceptual Framework for Abundance Estimation of Genomic Targets in the Presence of Ambiguous Short Sequencing Reads

    Górzcak, K., Claesen, J. & Burzykowski, T., 31 Dec 2019, In: Journal of Computational Biology. 27, 0, p. 1-16 16 p.

    Research output: Contribution to journalArticlepeer-review

  5. A molecular toolbox to estimate the number and diversity of Variovorax in the environment: application in soils treated with the phenylurea herbicide linuron

    Bers, K., Sniegowski, K., Albers, P., Breugelmans, P., Hendrickx, L., De Mot, R. & Springael, D., 1 Apr 2011, In: FEMS Microbiology Ecology. 76, 1, p. 14-25 12 p.

    Research output: Contribution to journalArticlepeer-review

  6. A PKS/NRPS/FAS Hybrid Gene Cluster from Serratia plymuthica RVH1 Encoding the Biosynthesis of Three Broad Spectrum, Zeamine-Related Antibiotics

    Masschelein, J., Mattheus, W., Gao, L-J., Moons, P., Van Houdt, R., Uytterhoeven, B., Lamberigts, C., Lescinier, E., Rozenski, J., Herdewijn, P., Aertsen, A., Michiels, C. & Lavigne, R., 17 Jan 2013, In: PLOS ONE. 8, 1, p. 54143-54143

    Research output: Contribution to journalArticlepeer-review

  7. Absolute quantification of microbial taxon abundances.

    Props, R., Monsieurs, P., Kerckhof, FM., Rubbens, P., De, V. J., Hernandez, S. E., Waegeman, J., Hammes, F. & Boon, N., 1 Feb 2017, In: The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 11, February 2017, p. 584-587 4 p.

    Research output: Contribution to journalArticlepeer-review

  8. Accurate prediction of metagenome‑assembled genome completeness by MAGISTA, a random forest model built on alignment‑free intra‑bin statistics

    Goussarov, G., Claesen, J., Ahmed, M., Leys, N., Vandamme, P. & Van Houdt, R., 5 Mar 2021, In: Environmental Microbiome. 17, 9, p. 1-13 13 p.

    Research output: Contribution to journalArticlepeer-review

  9. Adaptation of Cupriavidus metallidurans CH34 to Toxic Zinc Concentrations Involves an Uncharacterized ABC-Type Transporter

    Van Houdt, R., Vandecraen, J., Leys, N., Monsieurs, P. & Aertsen, A., 2 Feb 2021, In: Microorganisms. 9, 2, p. 1-14 14 p., 9020309.

    Research output: Contribution to journalArticlepeer-review

  10. Alveolar epithelium protects macrophages from quorum sensing-induced cytotoxicity in a three-dimensional co-culture model

    Crabbé, A., Sarker, S., Van Houdt, R., Ott, M., Leys, N., Cornelis, P., Nickerson, C. & Monsieurs, P., Mar 2011, In: Cellular Microbiology. 13, 3, p. 469-481

    Research output: Contribution to journalArticlepeer-review

  11. An efficient DNA isolation protocol for filamentous cyanobacteria of the genus Arthrospira

    Morin, N., Vallaeys, T., Hendrickx, L., Leys, N. & Wilmotte, A., 4 Jan 2010, In: Journal of Microbiological Methods. 80, 2, p. 148-154

    Research output: Contribution to journalArticlepeer-review

  12. Antimicrobial efficacy against Pseudomonas aeruginosa biofilm formation in a three-dimensional lung epithelial model and the influence of fetal bovine serum

    Crabbé, A., Liu, Y., Matthijs, N., Rigole, P., De La Fuente-Nùñez, C., Davis, R., Ledesma, M. A., Sarker, S., Van Houdt, R., Hancock, R. E. W., Coenye, T. & Nickerson, C. A., 3 Mar 2017, In: Scientific Reports. 7, p. 1-13 13 p., 43321.

    Research output: Contribution to journalArticlepeer-review

  13. Antimicrobial silver: uses, toxicity and potential for resistance

    Mijnendonckx, K., Leys, N., Mahillon, J., Silver, S. & Van Houdt, R., Jun 2013, In: Biometals. 26, 3, p. 1-15

    Research output: Contribution to journalArticlepeer-review

  14. Arthrospira - a multitalented microalga

    Janssen, P., Monsieurs, P., Vandenhove, H. & Massaut, V., 30 Apr 2014, In: International Innovation. 134, p. 58-60

    Research output: Contribution to journalArticlepeer-review

  15. Assessing the Impact of Flavophospholipol and Virginiamycin Supplementation on the Broiler Microbiota - a Prospective Controlled Intervention Study

    Ahmed, M., Berkell, M., Xavier, B., De Backer, S., Lammens, C. & Hautekiet, V., 31 Aug 2021, In: mSystems. 6, 4, p. 1-16 16 p., e00381-21.

    Research output: Contribution to journalArticlepeer-review

  16. Bacillus thuringiensis conjugation in simulated microgravity

    Beuls, E., Van Houdt, R., Leys, N., Dijkstra, C., Larkin, O., Mahillon, J. & Mijnendonckx, K., 21 Oct 2009, In: Astrobiology. 9, 8, p. 797-805

    Research output: Contribution to journalArticlepeer-review

  17. BacPipe: A rapid, user-friendly whole genome sequencing pipeline for clinical diagnostic bacteriology

    Xavier, B. B., Ahmed, M., Bolzan, M., Ribeiro-Gonçalves, B., Alako, B. T. F., Harrison, P., Lammens, C., Kumar-Singh, S., Goossens, H., Carriço, J. A., Cochrane, G. R. & Malhotra-kumar, S., 9 Dec 2019, In: iScience. 23, 100769, p. 1-28 28 p., 100767.

    Research output: Contribution to journalArticlepeer-review

  18. Biodegradability of dissolved organic matter in Boom Clay pore water under nitrate-reducing conditions: Effect of additional C and P sources

    Bleyen, N., Hendrix, K., Moors, H., Durce, D., Vasile, M. & Valcke, E., 2 May 2018, In: Applied Geochemistry. 92, p. 45-58 14 p.

    Research output: Contribution to journalArticlepeer-review

  19. Biofilm formation and the food industry, a focus on the bacterial outer surface

    Van Houdt, R. & Michiels, C. W., Oct 2010, In: Journal of Applied Microbiology. 109, 4, p. 1117-1131

    Research output: Contribution to journalArticlepeer-review

  20. Biological removal of 17a-ethinylestradiol by a nitrifier enrichment culture in a membrane bioreactor

    De Gusseme, B., Pycke, B., Hennebel, T., Marcoen, A., Vlaeminck, S. E., Noppe, H., Boon, N., Verstraete, W. & Van Houdt, R., Feb 2009, In: Water Research. 43, 9, p. 2493-2503

    Research output: Contribution to journalArticlepeer-review

  21. BioRock: new experiments and hardware to investigate microbe–mineral interactions in space

    Loudon, C-M., Nicholson, N., Finster, K., Leys, N., Byloos, B., Van Houdt, R., Rettberg, P., Moeller, R., Fuchs, F., Demets, R., Krause, J., Vukich, M., Mariani, A. & Cockell, C., 1 Oct 2018, In: International Journal of Astrobiology. 17, 4, p. 303-313 11 p.

    Research output: Contribution to journalArticlepeer-review

  22. Boom Clay pore water geochemistry at the Mol site - Experimental data as determined by in situ sampling of the piezometers

    Honty, M., Frederickx, L., Wang, L., De Craen, M., Thomas, P., Moors, H. & Jacops, E., 1 Jan 2022, In: Applied Geochemistry. 136, p. 1-19 19 p., 105156.

    Research output: Contribution to journalArticlepeer-review

  23. CATCh, an Ensemble Classifier for Chimera Detection in 16S rRNA Sequencing Studies

    Ahmed, M., Saeys, Y., Leys, N., Raes, J. & Monsieurs, P., 1 Mar 2015, In: Applied and Environmental Microbiology. 81, 5, p. 1573-1584

    Research output: Contribution to journalArticlepeer-review

  24. Changes in DNA Methylation in Arabidopsis thaliana Plants Exposed Over Multiple Generations to Gamma Radiation

    Laanen, P., Saenen, E., Ahmed, M. M., van de Walle, J., Van Hees, M., Nauts, R., Van Nieuwerburgh, F., Voorspoels, S., Jacobs, G., Cuypers, A. & Horemans, N., 31 Mar 2021, In: Frontiers in Plant Science. 12, p. 1-17 17 p., 611783.

    Research output: Contribution to journalArticlepeer-review

  25. Characteristics of the copper‐induced viable‐but‐non‐culturable state in bacteria

    Maertens, L., Matroule, J-Y. & Van Houdt, R., 5 Feb 2021, In: World Journal of Microbiology and Biotechnology. 37, 37, p. 1-9 9 p.

    Research output: Contribution to journalArticlepeer-review

  26. Characterization of culturable Paenibacillus spp. from the snow surface on the high Antarctic Plateau (DOME C) and their dissemination in the Concordia research station

    Van Houdt, R., Deghorain, M., Vermeersch, M., Provoost, A., Lo Guidice, A., Leys, N., Perez-Morga, D., Van Melderen, L., Michaud, L. & Moors, H., Jul 2013, In: Extremophiles. 17, 4, p. 565-573

    Research output: Contribution to journalArticlepeer-review

  27. Characterization of the bacterial communities on recent Icelandic volcanic deposits of different ages

    Byloos, B., Monsieurs, P., Ahmed, M., Leys, N., Boon, N. & Van Houdt, R., 24 Sep 2018, In: BMC Microbiology. 11 p., 18:122.

    Research output: Contribution to journalArticlepeer-review

  28. Characterization of the Survival Ability of Cupriavidus metallidurans and Ralstonia pickettii from Space-Related Environments

    Mijnendonckx, K., Provoost, A., Ott, C. M., Venkateswaran, K., Mahillon, J., Leys, N. & Van Houdt, R., Feb 2013, In: Microbial Ecology. 65, 2, p. 347-360

    Research output: Contribution to journalArticlepeer-review

  29. Characterization of Triclosan-Resistant Mutants Reveals Multiple Antimicrobial Resistance Mechanisms in Rhodospirillum rubrum S1H

    Pycke, B., Crabbé, A., Verstraete, W. & Leys, N., 1 May 2010, In: Applied and Environmental Microbiology. 76, 10, p. 3116-3123

    Research output: Contribution to journalArticlepeer-review

  30. Comparison of Antibiotic Resistance, Biofilm Formation and Conjugative Transfer of Staphylococcus and Enterococcus Isolates from International Space Station and Antarctic Research Station Concordia

    Katarzyna, S., Arends, K., Rogowski, K. M., Fürch, S., Prescha, K., Sakinc, T., Van Houdt, R., Werner, G. & Grohmann, E., Apr 2013, In: Microbial Ecology. 65, 3, p. 638-651

    Research output: Contribution to journalArticlepeer-review

  31. Conjugative transfer of broad host range plasmids to an acidobacterial strain, Edaphobacter aggregans

    Bouhajja, E., Efthymiopoulus, T., George, I. F., Moreels, D., Van Houdt, R., Mergeay, M. & Agathos, S. N., 22 Jan 2016, In: Journal of Biotechnology. 221, p. 107-113

    Research output: Contribution to journalArticlepeer-review

  32. Copper resistance mediates long-term survival of Cupriavidus metallidurans in wet contact with metallic copper

    Maertens, L., Coninx, I., Claesen, J., Leys, N., Matroule, J-Y. & Van Houdt, R., 3 Jun 2020, In: Frontiers in Microbiology. p. 1-11 11 p.

    Research output: Contribution to journalArticlepeer-review

  33. Cupriavidus metallidurans CH34, a historical perspective on its discovery, characterization and metal resistance

    Mergeay, M. & Van Houdt, R., 1 Feb 2021, In: FEMS Microbiology Ecology. 97, 2, p. 1-8 8 p., fiaa247.

    Research output: Contribution to journalArticlepeer-review

  34. Cupriavidus metallidurans NA4 actively forms polyhydroxybutyrate-associated uranium-phosphate precipitates

    Rogiers, T., Merroun, M. L., Williamson, A., Leys, N., Van Houdt, R., Boon, N. & Mijnendonckx, K., 5 Jan 2022, In: Journal of Hazardous Materials. 421, p. 1-10 10 p., 126737.

    Research output: Contribution to journalArticlepeer-review

  35. Cyclical patterns affect microbial dynamics in the water basin of a nuclear research reactor

    Van Eesbeeck, V., Props, R., Ahmed, M. M., Petit, P., Rivasseau, C., Armengaud, J., Monsieur, P., Mahillon, J. & Leys, N., 15 Oct 2021, In: Frontiers in Microbiology. p. 1-11 11 p., 744115.

    Research output: Contribution to journalArticlepeer-review

  36. Deuteros 2.0: peptide-level significance testing of data from hydrogen deuterium exchange mass spectrometry

    Lau, A. M., Claesen, J., Hansen, K. & Politis, A., 8 Jan 2021, In: Bioinformatics. 37, 2, p. 270-272 3 p.

    Research output: Contribution to journalArticlepeer-review

  37. Differential proteomic analysis using isotope-coded protein-labeling strategies: Comparison, improvements and application to simulated microgravity effect on Cupriavidus metallidurans CH34

    Leroy, B., Rosier, C., Erculisse, V., Leys, N., Mergeay, M. & Wattiez, R., 18 Mar 2010, In: Proteomics. 10, 12, p. 2281-2291

    Research output: Contribution to journalArticlepeer-review

  38. Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions

    Crabbé, A., Leroy, B., Wattiez, R., Aertsen, A., Leys, N., Cornelis, P., Van Houdt, R. & Mastroleo, F., Nov 2012, In: BMC Microbiology. 12, p. 282-287

    Research output: Contribution to journalArticlepeer-review

  39. Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core

    Petit, P., Pible, O., Van Eesbeeck, V., Alban, C., Steinmetz, G., Ahmed, M., Monsieurs, P., Armengaud, J. & Rivasseau, C., 25 Nov 2020, In: Microorganisms. 8, 12, p. 1-12 12 p., 8121857.

    Research output: Contribution to journalArticlepeer-review

  40. Distribution of Nitrosomonas europaea and Nitrobacter winogradskyi in an autotrophic nitrifying biofilm reactor as depicted by molecular analyses and mathematical modelling

    Montras, A., Pycke, B., Boon, N., Godia, F., Mergeay, M., Hendrickx, L. & Pérez, J., Mar 2008, In: Water Research. 42, 6-7, p. 1700-1714

    Research output: Contribution to journalArticlepeer-review

  41. DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

    Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In: Frontiers in Microbiology. p. 1-17 17 p., 1635.

    Research output: Contribution to journalArticlepeer-review

  42. Draft Genome Sequences of Ralstonia pickettii Strains SSH4 and CW2, Isolated from Space Equipment.

    Monsieurs, P., Mijnendonckx, K., Provoost, A., Venkateswaran, K., Ott, M., Leys, N., Van Houdt, R., Moors, H. & Janssen, P., 4 Sep 2014, In: Genome Announcements. 2, 5, p. e0088714-e0088714

    Research output: Contribution to journalArticlepeer-review

  43. Effect of Applying Struvite and Organic N as Recovered Fertilizers on the Rhizosphere Dynamics and Cultivation of Lupine (Lupinus angustifolius)

    Robles-Aguilar, A. A., Grunert, O., Hernandez-Sanabria, E., Ahmed, M. M., Meers, E., Boon, N. & Jablonowski, N. D., 1 Nov 2020, In: Frontiers in Plant Science. p. 1-17 17 p., 572741.

    Research output: Contribution to journalArticlepeer-review

  44. Effect of microgravity & space radiation on microbes

    Senatore, G., Mastroleo, F., Leys, N. & Mauriello, G., 10 May 2018, In: Future Microbiology. 13, 7, p. 831–847 18 p.

    Research output: Contribution to journalArticlepeer-review

  45. Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung

    Dingemans, J., Monsieurs, P., Yu, S-H., Crabbé, A., Förstner, K. U., Malfroot, A., Cornelis, P. & Van Houdt, R., 2 Aug 2016, In: mBio. 7, 4, 16 p., e00813-16.

    Research output: Contribution to journalArticlepeer-review

  46. Environmental conditions modulate the transcriptomic response of both caulobacter crescentus morphotypes to Cu stress

    Maertens, L., Cherry, P., Tilquin, F., Van Houdt, R. & Matroule, J-Y., 21 May 2021, In: Microorganisms. 9, 6, p. 1-25 25 p., 9061116.

    Research output: Contribution to journalArticlepeer-review

  47. Evaluation of the Airborne Bacterial Population in the Periodically Confined Antarctic Base Concordia

    Van Houdt, R., De Boever, P., Coninx, I., Le Calvez, C., Dicasillati, R., Mahillon, J., Mergeay, M., Leys, N., Moors, M. & Monsieurs, P., May 2009, In: Microbial Ecology. 57, 4, p. 640-648

    Research output: Contribution to journalArticlepeer-review

  48. Evidence and characteristics of a diverse and metabolically active microbial community in deep subsurface clay borehole water

    Wouters, K., Moors, H., Boven, P. & Leys, N., Dec 2013, In: FEMS Microbiology Ecology. 86, 3, p. 458-473

    Research output: Contribution to journalArticlepeer-review

  49. Evolutionary Divergence of Brain-specific Precursor miRNAs Drives Efficient Processing and Production of Mature miRNAs in Human

    Chakroborty, S., Islam, M. R., Ali, M. M. & Nabi, A. H. M. N., 10 Nov 2018, In: Neuroscience. 392, p. 141-159 19 p.

    Research output: Contribution to journalArticlepeer-review

  50. Ex and in situ reactivity and sorption of selenium in Opalinus clay in the presence of a selenium reducing microbial community

    Bleyen, N., Small, J., Mijnendonckx, K., Hendrix, K., Albrecht, A., De Cannière, P., Surkova, M., Wittebroodt, C. & Valcke, E., 13 Jul 2021, In: Minerals. 11, 757, p. 1-33 33 p., 11070757.

    Research output: Contribution to journalArticlepeer-review

  51. Experimental design and environmental parameters affect Rhodospirillum rubrum S1H response to space flight

    Mastroleo, F., Van Houdt, R., Leroy, B., Benotmane, R., Janssen, A., Mergeay, M., Vanhavere, F., Hendrickx, L., Wattiez, R., Leys, N. & Monsieurs, P., 2 Jul 2009, In: The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 3, 12, p. 1402-1419

    Research output: Contribution to journalArticlepeer-review

  52. Expression of a Novel P22 ORFan Gene Reveals the Phage Carrier State in Salmonella Typhimurium

    Cenens, W., Mebrhatu, M. T., Makumi, A., Ceyssens, P-J., Lavigne, R., Van Houdt, R., Taddei, F. & Aertsen, A., 14 Feb 2013, In: PLOS Genetics. 9, 2, p. 1003269-1

    Research output: Contribution to journalArticlepeer-review

  53. Ferrous Iron Is a Significant Component of Bioavailable Iron in Cystic Fibrosis Airways

    Hunter, R. C., Asfour, F., Dingemans, J., Osuna, B. L., Samad, T., Malfroot, A., Cornelis, P., Newman, D. K. & Van Houdt, R., Aug 2013, In: mBio. 4, 4, p. 1-8

    Research output: Contribution to journalArticlepeer-review

  54. First Description of Various Bacteria Resistant to Heavy Metals and Antibiotics Isolated from Polluted Sites in Tunisia

    Ali, M. M., Dziri, O., Ferjani, S., Ahmed, M. M., Boutiba Ben Boubaker, I., Van Houdt, R. & Chouchani, C., 1 Jun 2021, In: Polish Journal of Microbiology. 70, 2, p. 161-174 14 p.

    Research output: Contribution to journalArticlepeer-review

  55. First report of cross resistance to silver and antibiotics in Klebsiella pneumoniae isolated from patients and polluted water in Tunisia

    Ben Miloud, S., Ali, M. M., Boutiba Ben Boubaker, I., Van Houdt, R. & Chouchani, C., May 2021, In: Water and environment journal. 35, 2, p. 730-739 10 p.

    Research output: Contribution to journalArticlepeer-review

  56. Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population-specific feeding rates by invasive dreissenid mussels

    Props, R., Schmidt, M. L., Heyse, J., Vanderploeg, H. A., Boon, N. & Denef, V. J., 1 Feb 2018, In: Environmental Microbiology. 20, 2, p. 521-534 14 p.

    Research output: Contribution to journalArticlepeer-review

  57. From industrial sites to environmental applications with Cupriavidus metallidurans

    Diels, L., Van Roy, S., Taghavi, S., Van Houdt, R. & Moors, H., Aug 2009, In: Antonie van Leeuwenhoek. 96, 2, p. 247-258

    Research output: Contribution to journalArticlepeer-review

  58. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data. OCToPUS 16s Metagenomic pipeline

    Ahmed, M. M., Njima, M., Leys, N., Raes, J. & Monsieurs, P., 1 Feb 2017, In: GigaScience. 6, 1-10, p. 1-10 10 p.

    Research output: Contribution to journalArticlepeer-review

  59. From the deep sea to the stars: human life support through minimal communities

    Hendrickx, L. & Mergeay, M., 5 Jun 2007, In: Current opinion in microbiology. 10, 3, p. 231-237

    Research output: Contribution to journalArticlepeer-review

  60. Fungi and Mycotoxins in Space - A Review

    De Middeleer, G., Leys, N., Sas, B. & De Saeger, S., 11 Apr 2019, In: Astrobiology. 19, 7, p. 1-12 12 p.

    Research output: Contribution to journalArticlepeer-review

  61. Gene expansion and positive selection as bacterial adaptations to oligotrophic conditions

    Props, R., Monsieurs, P., Vandamme, P., Leys, N., Denef, V. J. & Boon, N., 6 Feb 2019, In: mSphere. 4, 1, p. 1-16 16 p., e00011-19.

    Research output: Contribution to journalArticlepeer-review

  62. Gene expression-based biodosimetry for radiological incidents: assessment of dose and time after radiation exposure

    Macaeva, E., Ahmed, M., De Vos, W. H., Baatout, S. & Quintens, R., Jan 2019, In: International Journal of Radiation Biology. 95, 1, p. 64-75 12 p.

    Research output: Contribution to journalArticlepeer-review

  63. Gene set enrichment analysis highlights different gene expression profiles in whole blood samples X-irradiated with low and high doses

    El Saghire, H., Thierens, H., Monsieurs, P., Michaux, A., Vandevoorde, C. & Baatout, S., Aug 2013, In: International Journal of Radiation Biology. 89, 8, p. 628-638

    Research output: Contribution to journalArticlepeer-review

  64. Genetic Responses of Metabolically Active Limnospira indica Strain PCC 8005 Exposed to gamma-Radiation during Its Lifecycle

    Yadav, A., Maertens, L., Meese, T., Van Nieuwerburgh, F., Ahmed, M., Leys, N., Cuypers, A. & Janssen, P., 30 Jul 2021, In: Microorganisms. 9, 8, p. 1-32 32 p., 1626.

    Research output: Contribution to journalArticlepeer-review

  65. Genome Sequence of Cupriavidus metallidurans Strain H1130, Isolated from an Invasive Human Infection

    Monsieurs, P., Provoost, A., Mijnendonckx, K., Leys, N., Gaudreau, C., Van Houdt, R., Moors, H. & Janssen, P., 12 Dec 2013, In: Genome Announcements. 1, 6, p. e01051-e01051

    Research output: Contribution to journalArticlepeer-review

  66. Genome Sequence of Serratia plymuthica RVH1, Isolated from a Raw Vegetable-Processing Line

    Van Houdt, R., Van der Lelie, D., Izquierdo, J. A., Aertsen, A., Masschelein, J., Lavigne, R., Michiels, C. W. & Taghavi, S., 6 Feb 2014, In: Genome Announcements. 2, 1, p. 00021-14

    Research output: Contribution to journalArticlepeer-review

  67. Genome Sequence of the Edible Cyanobacterium Arthrospira sp. PCC 8005

    Janssen, P., Morin, N., Mergeay, M., Leroy, B., Wattiez, R., Vallaeys, T., Waleron, K., Waleron, M., Wilmotte, A., Quillardet, P., Tandeau de Marsac, N., Talla, E., Zhang, C-C., Leys, N., Collard, G., Baatout, S. & Moors, H., 1 May 2010, In: Journal of Bacteriology. 192, 9, p. 2465-2466

    Research output: Contribution to journalArticlepeer-review

  68. Genome Sequences of Cupriavidus metallidurans Strains NA1, NA4, and NE12, Isolated from Space Equipment

    Monsieurs, P., Mijnendonckx, K., Provoost, A., Venkateswaran, K., Ott, M., Leys, N., Van Houdt, R., Moors, H. & Mastroleo, F., 24 Jul 2014, In: Genome Announcements. 2, 4, p. E00719-E00719

    Research output: Contribution to journalArticlepeer-review

  69. Genome-wide transcriptional analysis suggests hydrogenase- and nitrogenase-mediated hydrogen production in Clostridium butyricum CWBI 1009

    Calusinska, M., Hamilton, C., Monsieurs, P., Mathy, G., Leys, N., Franck, F., Joris, B., Thonart, P., Hiligsmann, S., Wilmotte, A., Van Houdt, R. & Moors, H., 22 Feb 2015, In: Biotechnology for Biofuels. 8, 27, p. 1-16

    Research output: Contribution to journalArticlepeer-review

  70. Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans

    Ali, M. M., Provoost, A., Maertens, L., Leys, N., Monsieurs, P., Charlier, D. & Van Houdt, R., 18 Jan 2019, In: Genes. 10, p. 1-22 22 p., 10010063.

    Research output: Contribution to journalArticlepeer-review

  71. Growth of Lactobacillus reuteri DSM17938 Under Two Simulated Microgravity Systems: Changes in Reuterin Production, Gastrointestinal Passage Resistance, and Stress Genes Expression Response

    Senatore, G., Mastroleo, F., Leys, N. & Mauriello, G., 1 Jan 2020, In: Astrobiology. 20, 1, p. 1-14 14 p.

    Research output: Contribution to journalArticlepeer-review

  72. Harvesting carbohydrate-rich Arthrospira platensis by spontaneous settling

    Depraetere, O., Pierre, G., Deschoenmaeker, F., Badri, H., Foubert, I., Leys, N., Markou, G., Wattiez, R., Philippe, M., Muylaert, K. & Janssen, P., Mar 2015, In: Bioresource Technology. 180, p. 16-21

    Research output: Contribution to journalArticlepeer-review

  73. Helical and linear morphotypes of Arthrospira sp. PCC 8005 display genomic differences and respond differently to 60Co gamma irradiation

    Yadav, A., Monsieurs, P., Misztak, A., Waleron, K., Leys, N., Cuypers, A. & Janssen, P., 21 Nov 2019, In: European Journal of Phycology. p. 1-18 18 p.

    Research output: Contribution to journalArticlepeer-review

  74. Impact of the electron donor on in situ microbial nitrate reduction in Opalinus Clay: results from the Mont Terri rock laboratory (Switzerland)

    Bleyen, N., Smets, S., Small, J., Moors, H., Leys, N., Albrecht, A., De Cannière, P., Schwyn, B., Wittebroodt, C. & Valcke, E., 1 Apr 2017, In: Swiss Journal of Geosciences. 110, 1, p. 355-374 20 p.

    Research output: Contribution to journalArticlepeer-review

  75. Incidence and predictive biomarkers of Clostridioides difficile infection in hospitalized patients receiving broad-spectrum antibiotics

    van Werkhoven, C. H., Ducher, A., Berkell, M., Ahmed, M., Lammens, C., Torre-Cisneros, J., Rodríguez-Baño, J., Herghea, D., Cornely, O. A., Biehl, L. M., Bernard, L., Dominguez-Luzon, M. A., Maraki, S., Barraud, O., Nica, M., Jazmati, N., Sablier-Gallis, F., De Gunzburg, J., de Gunzburg, J., Malhotra-kumar, S., Bonten, M. J. M. & Vehreschild, M. J. G. T., 14 Apr 2021, In: Nature Communications. 12, p. 1-10 10 p., 2240.

    Research output: Contribution to journalArticlepeer-review

  76. Inferring the transcriptional network of Bacillus subtilis

    Fadda, A., Fierro, A. C., Lemmens, K., Monsieurs, P., Engelen, K. & Marchal, K., 1 Nov 2009, In: Molecular Biosystems. 5, 12, p. 1840-1852

    Research output: Contribution to journalArticlepeer-review

  77. Insertion sequence elements in Cupriavidus metallidurans CH34: Distribution and role in adaptation

    Mijnendonckx, K., Provoost, A., Monsieurs, P., Leys, N., Mergeay, M., Mahillon, J. & Van Houdt, R., 1 Jan 2010, In: Plasmid. 65, 3, p. 193-203

    Research output: Contribution to journalArticlepeer-review

  78. Integrated regulation of acetoin fermentation by quorum sensing and pH in Serratia plymuthica RVH1

    Moons, P., Van Houdt, R., Vivijs, B., Michiels, C. & Aertsen, A., May 2011, In: Applied and Environmental Microbiology. 77, 10, p. 3422-3427

    Research output: Contribution to journalArticlepeer-review

  79. Intensity modulated radiotherapy induces pro-inflammatory and pro-survival responses in prostate cancer patients

    El Saghire, H., Vandevoorde, C., Ost, P., Monsieurs, P., Michaux, A., De Meerleer, G., Baatout, S. & Thierens, H., Feb 2014, In: International Journal of Oncology. 44, 4, p. 1073-1083

    Research output: Contribution to journalArticlepeer-review

  80. Intestinal mucositis precedes dysbiosis in a mouse model for pelvic irradiation

    Segers, C., Ahmed, M., Claesen, J., Baatout, S., Leys, N., Lebeer, S., Verslegers, M. & Mastroleo, F., 10 Jun 2021, In: ISME Communications. 1, p. 1-10 10 p., 24.

    Research output: Contribution to journalArticlepeer-review

  81. Intrapulmonary percussive ventilation improves lung function in cystic fibrosis patients chronically colonized with Pseudomonas aeruginosa: a pilot cross-over study

    Dingemans, J., Eyns, H., Willekens, J., Monsieurs, P., Van Houdt, R., Cornelis, P., Malfroot, A. & Crabbé, A., 20 Mar 2018, In: European Journal of Clinical Microbiology & Infectious Diseases. 37, p. 1143-1151 8 p.

    Research output: Contribution to journalArticlepeer-review

  82. Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data

    Goussarov, G., Ahmed, M., Vandamme, P. & Van Houdt, R., 9 Jun 2022, In: Microbiology Open. 11, 3, p. 1-19 19 p., e1298.

    Research output: Contribution to journalArticlepeer-review

  83. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data

    Ahmed, M., Leys, N., Raes, J. & Monsieurs, P., 29 Apr 2016, In: BMC Bioinformatics. 17, p. 192:1-192:11 11 p.

    Research output: Contribution to journalArticlepeer-review

  84. Irradiation at Ultra-high (FLASH) Dose Rates Reduces Acute Normal Tissue Toxicity in the Mouse Gastrointestinal System

    Ruan, J-L., Lee, C., Wouters, S., Tullis, I. D. C., Verslegers, M., Ahmed, M. M., Then, C. K., Smart, S. C., Hill, M. A., Muschel, R. J., Giaccia, A. J., Vojnovic, B., Kiltie, A. E. & Petersson, K., 1 Dec 2021, In: International Journal of Radiation Oncology, Biology, Physics. 111, 5, p. 1250-1261 12 p.

    Research output: Contribution to journalArticlepeer-review

  85. Lead(II) resistance in Cupriavidus metallidurans CH34: interplay between plasmid and chromosomally-located functions

    Taghavi, S., Lesaulnier, C., Monchy, S., Wattiez, R., Mergeay, M. & van der Lelie, D., 1 Aug 2009, In: Antonie van Leeuwenhoek. 96, 2, p. 171-182

    Research output: Contribution to journalArticlepeer-review

  86. Limnospira indica PCC8005 growth in photobioreactor: model and simulation of the ISS and ground experiments

    Poughon, L., Laroche, C., Creuly, C., Paillé, C., Lasseur, C., Monsieurs, P., Heylen, W., Coninx, I., Mastroleo, F. & Leys, N., 1 May 2020, In: Life Sciences in Space Research. 25, p. 53-65 13 p.

    Research output: Contribution to journalArticlepeer-review

  87. Loss of Furin in β cells Induces an mTORC1-ATF4 Anabolic Pathway that Leads to β cell Dysfunction

    Brouwers, B., Coppola, I., Vints, K., Dislich, B., Van Lommel, L., Segers, C., Gounko, N. V., Thorrez, L., Schuit, F., Lichtenthaler, S. F., Estall, J. L., Declercq, J., Ramos-Molina, B. & Creemers, J. W. M., 4 Dec 2020, In: Diabetes. 70, 2, p. 492-503 12 p., db200474.

    Research output: Contribution to journalArticlepeer-review

  88. Low dose irradiation of thyroid cells reveals a unique transcriptomic and epigenetic signature in RET/PTC-positive cells

    Abouelaradat, K., Monsieurs, P., Anastasov, N., Atkinson, M., Derradji, H., De Meyer, T., Bekaert, S., Van Criekinge, W. & Baatout, S., Mar 2012, In: Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis. 731, 1-2, p. 27-40

    Research output: Contribution to journalArticlepeer-review

  89. Measuring the biodiversity of microbial communities by flow cytometry

    Props, R., Monsieurs, P., Ahmed, M., Clement, L. & Boon, N., 1 Nov 2016, In: Methods in Ecology and Evolution. 7, 11, p. 1376-1385

    Research output: Contribution to journalArticlepeer-review

  90. Measuring the effective diffusion coefficient of dissolved hydrogen in saturated Boom Clay

    Jacops, E., Wouters, K., Volckaert, G., Moors, H., Maes, N., Bruggeman, C., Swennen, R. & Littke, R., Oct 2015, In: Applied Geochemistry. 61, p. 175-184

    Research output: Contribution to journalArticlepeer-review

  91. Mechanisms of gold biomineralization in the bacterium Cupriavidus metallidurans

    Reith, F., Etschmann, B., Grosse, C., Moors, H., Benotmane, R., Monsieurs, P., Grass, G., Doonan, C., Vogt, S., Lai, B., Martinez-Criado, G., George, G. N., Nies, D. H., Mergeay, M., Pring, A., Southam, G. & Brugger, J., 20 Oct 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 42, p. 17757-17762

    Research output: Contribution to journalArticlepeer-review

  92. Media Ion Composition Controls Regulatory and Virulence Response of Salmonellain Spaceflight

    Wilson, J., Ott, M., Quick, L., Davis, R., Höner zu Bentrup, K., Crabbé, A., Richter, E., Sarker, S., Barrila, J., Porwollik, S., Cheng, P., McClelland, M., Tsapraillis, G., Radabaugh, T., Hunt, A., Shah, M., Nelman-Gonzalez, M., Hing, S., Perra, M., Dumars, P., Norwood, K., Bober, R., Devich, J., Ruggles, A., CdeBaca, A., Narayan, S., Benjamin, J., Goulart, C., Rupert, M., Catella, L., Schurr, M., Buchanan, K., Morici, L., McCracken, J., Porter, M., Pierson, D., Smith, S., Mergeay, M., Leys, N., Stefanyshyn-Piper, H., Gorie, D. & Nickerson, C., Dec 2008, In: PLOS ONE. 3, 12, p. e3923-e3923

    Research output: Contribution to journalArticlepeer-review

  93. Metaproteomics, heterotrophic growth, and distribution of nitrosomonas europaea and nitrobacter winogradskyi after long-term operation of an autotrophic nitrifying biofilm reactor

    Mastroleo, F., Arnau, C., Verbeelen, T., Ahmed, M., Gòdia, F., Leys, N. & Van Houdt, R., 9 Mar 2022, In: Applied Microbiology. 2, 1, p. 272-287 16 p., 201002.

    Research output: Contribution to journalArticlepeer-review

  94. Microarray analysis of a microbe–mineral interaction

    Olsson-Francis, K., Van Houdt, R., Mergeay, M., Leys, N., Cockell, C. S. & Moors, H., Dec 2010, In: Geobiology. 8, 5, p. 446-456

    Research output: Contribution to journalArticlepeer-review

  95. Microarray gene expression analysis Highlights Different Profiles in Whole Blood Samples X-Irradiated with Low and High Doses

    El Saghire, H., Thierens, H., Monsieurs, P., Michaux, A., Vandevoorde, C., Vanmarcke, H. & Baatout, S., Apr 2013, In: Annalen van de Belgische Vereniging voor Stralingsbescherming / Annales de l'association Belge de radioprotection. 38, 3, p. 279-287

    Research output: Contribution to journalArticlepeer-review

  96. Microbial contamination monitoring and control during human space missions

    Van Houdt, R., Mijnendonckx, K., Leys, N. & Mergeay, M., Jan 2012, In: Planetary and Space Science. 60, 1, p. 115-120

    Research output: Contribution to journalArticlepeer-review

  97. Microbial Monitoring in the EDEN ISS Greenhouse, a Mobile Test Facility in Antarctica

    Fahrion, J., Fink, C., Zabel, P., Schubert, D., Ahmed, M. M., Van Houdt, R., Eikmanns, B., Beblo-Vranesevic, K. & Rettberg, P., 31 Mar 2020, In: Frontiers in Microbiology. p. 1-15 15 p.

    Research output: Contribution to journalArticlepeer-review

  98. Microbially-Enhanced Vanadium Mining and Bioremediation Under Micro- and Mars Gravity on the International Space Station

    Cockell, C. S., Santomartino, R., Finster, K., Waajen, A. C., Nicholson, N., Loudon, C-M., Eades, L. J., Moeller, R., Rettberg, P., Fuchs, F., Van Houdt, R., Leys, N., Coninx, I., Hatton, J., Parmitano, L., Krause, J., Koehler, A., Caplin, N., Zuijderduijn, L., Mariani, A., Pellari, S. S., Carubia, F., Luciani, G., Balsamo, M., Zolesi, V., Zolesi, V., Ochoa, J., Sen, P., Watt, J. A. J., Doswald-Winkler, J., Herova, M., Rattenbacher, B., Wadsworth, J., Everroad, C. R. & Demets, R., 1 Apr 2021, In: Frontiers in Microbiology. p. 1-15 15 p.

    Research output: Contribution to journalArticlepeer-review

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