Microbiology

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  2. Cupriavidus metallidurans strains with different mobilomes and from distinct environments have comparable phenomes

    Van Houdt, R., Provoost, A., Van Assche, A., Leys, N., Lievens, B., Mijnendonckx, K. & Monsieurs, P., 18 Oct 2018, In: Genes. 9, 10, 23 p., 507.

    Research output: Contribution to journalArticlepeer-review

  3. A “Refined Hydrogen Rule” and a “Refined Hydrogen and Halogen Rule” for Organic Molecules

    Claesen, J., Valkenborg, D. & Burzykowski, T., 2 Jan 2020, In: Journal of Mass Spectrometry. 31, 1, p. 132-136 5 p.

    Research output: Contribution to journalArticlepeer-review

  4. A Conceptual Framework for Abundance Estimation of Genomic Targets in the Presence of Ambiguous Short Sequencing Reads

    Górzcak, K., Claesen, J. & Burzykowski, T., 31 Dec 2019, In: Journal of Computational Biology. 27, 0, p. 1-16 16 p.

    Research output: Contribution to journalArticlepeer-review

  5. A molecular toolbox to estimate the number and diversity of Variovorax in the environment: application in soils treated with the phenylurea herbicide linuron

    Bers, K., Sniegowski, K., Albers, P., Breugelmans, P., Hendrickx, L., De Mot, R. & Springael, D., 1 Apr 2011, In: FEMS Microbiology Ecology. 76, 1, p. 14-25 12 p.

    Research output: Contribution to journalArticlepeer-review

  6. A PKS/NRPS/FAS Hybrid Gene Cluster from Serratia plymuthica RVH1 Encoding the Biosynthesis of Three Broad Spectrum, Zeamine-Related Antibiotics

    Masschelein, J., Mattheus, W., Gao, L-J., Moons, P., Van Houdt, R., Uytterhoeven, B., Lamberigts, C., Lescinier, E., Rozenski, J., Herdewijn, P., Aertsen, A., Michiels, C. & Lavigne, R., 17 Jan 2013, In: PLOS ONE. 8, 1, p. 54143-54143

    Research output: Contribution to journalArticlepeer-review

  7. Absolute quantification of microbial taxon abundances.

    Props, R., Monsieurs, P., Kerckhof, FM., Rubbens, P., De, V. J., Hernandez, S. E., Waegeman, J., Hammes, F. & Boon, N., 1 Feb 2017, In: The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 11, February 2017, p. 584-587 4 p.

    Research output: Contribution to journalArticlepeer-review

  8. Accurate prediction of metagenome‑assembled genome completeness by MAGISTA, a random forest model built on alignment‑free intra‑bin statistics

    Goussarov, G., Claesen, J., Ahmed, M., Leys, N., Vandamme, P. & Van Houdt, R., 5 Mar 2021, In: Environmental Microbiome. 17, 9, p. 1-13 13 p.

    Research output: Contribution to journalArticlepeer-review

  9. Adaptation of Cupriavidus metallidurans CH34 to Toxic Zinc Concentrations Involves an Uncharacterized ABC-Type Transporter

    Van Houdt, R., Vandecraen, J., Leys, N., Monsieurs, P. & Aertsen, A., 2 Feb 2021, In: Microorganisms. 9, 2, p. 1-14 14 p., 9020309.

    Research output: Contribution to journalArticlepeer-review

  10. Alveolar epithelium protects macrophages from quorum sensing-induced cytotoxicity in a three-dimensional co-culture model

    Crabbé, A., Sarker, S., Van Houdt, R., Ott, M., Leys, N., Cornelis, P., Nickerson, C. & Monsieurs, P., Mar 2011, In: Cellular Microbiology. 13, 3, p. 469-481

    Research output: Contribution to journalArticlepeer-review

  11. An efficient DNA isolation protocol for filamentous cyanobacteria of the genus Arthrospira

    Morin, N., Vallaeys, T., Hendrickx, L., Leys, N. & Wilmotte, A., 4 Jan 2010, In: Journal of Microbiological Methods. 80, 2, p. 148-154

    Research output: Contribution to journalArticlepeer-review

  12. Antimicrobial efficacy against Pseudomonas aeruginosa biofilm formation in a three-dimensional lung epithelial model and the influence of fetal bovine serum

    Crabbé, A., Liu, Y., Matthijs, N., Rigole, P., De La Fuente-Nùñez, C., Davis, R., Ledesma, M. A., Sarker, S., Van Houdt, R., Hancock, R. E. W., Coenye, T. & Nickerson, C. A., 3 Mar 2017, In: Scientific Reports. 7, p. 1-13 13 p., 43321.

    Research output: Contribution to journalArticlepeer-review

  13. Antimicrobial silver: uses, toxicity and potential for resistance

    Mijnendonckx, K., Leys, N., Mahillon, J., Silver, S. & Van Houdt, R., Jun 2013, In: Biometals. 26, 3, p. 1-15

    Research output: Contribution to journalArticlepeer-review

  14. Arthrospira - a multitalented microalga

    Janssen, P., Monsieurs, P., Vandenhove, H. & Massaut, V., 30 Apr 2014, In: International Innovation. 134, p. 58-60

    Research output: Contribution to journalArticlepeer-review

  15. Assessing the Impact of Flavophospholipol and Virginiamycin Supplementation on the Broiler Microbiota - a Prospective Controlled Intervention Study

    Ahmed, M., Berkell, M., Xavier, B., De Backer, S., Lammens, C. & Hautekiet, V., 31 Aug 2021, In: mSystems. 6, 4, p. 1-16 16 p., e00381-21.

    Research output: Contribution to journalArticlepeer-review

  16. Bacillus thuringiensis conjugation in simulated microgravity

    Beuls, E., Van Houdt, R., Leys, N., Dijkstra, C., Larkin, O., Mahillon, J. & Mijnendonckx, K., 21 Oct 2009, In: Astrobiology. 9, 8, p. 797-805

    Research output: Contribution to journalArticlepeer-review

  17. BacPipe: A rapid, user-friendly whole genome sequencing pipeline for clinical diagnostic bacteriology

    Xavier, B. B., Ahmed, M., Bolzan, M., Ribeiro-Gonçalves, B., Alako, B. T. F., Harrison, P., Lammens, C., Kumar-Singh, S., Goossens, H., Carriço, J. A., Cochrane, G. R. & Malhotra-kumar, S., 9 Dec 2019, In: iScience. 23, 100769, p. 1-28 28 p., 100767.

    Research output: Contribution to journalArticlepeer-review

  18. Biodegradability of dissolved organic matter in Boom Clay pore water under nitrate-reducing conditions: Effect of additional C and P sources

    Bleyen, N., Hendrix, K., Moors, H., Durce, D., Vasile, M. & Valcke, E., 2 May 2018, In: Applied Geochemistry. 92, p. 45-58 14 p.

    Research output: Contribution to journalArticlepeer-review

  19. Biofilm formation and the food industry, a focus on the bacterial outer surface

    Van Houdt, R. & Michiels, C. W., Oct 2010, In: Journal of Applied Microbiology. 109, 4, p. 1117-1131

    Research output: Contribution to journalArticlepeer-review

  20. Biological removal of 17a-ethinylestradiol by a nitrifier enrichment culture in a membrane bioreactor

    De Gusseme, B., Pycke, B., Hennebel, T., Marcoen, A., Vlaeminck, S. E., Noppe, H., Boon, N., Verstraete, W. & Van Houdt, R., Feb 2009, In: Water Research. 43, 9, p. 2493-2503

    Research output: Contribution to journalArticlepeer-review

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