BacPipe: A rapid, user-friendly whole genome sequencing pipeline for clinical diagnostic bacteriology

Xavier, B. B., Ahmed, M., Bolzan, M., Ribeiro-Gonçalves, B., Alako, B. T. F., Harrison, P., Lammens, C., Kumar-Singh, S., Goossens, H., Carriço, J. A., Cochrane, G. R. & Malhotra-kumar, S. 9 Dec 2019 In : iScience. 23, 100769, p. 1-28 28 p., 100767

Research output: Contribution to journal › Article

Tomato plants rather than fertilizers drive microbial community structure in horticultural growing media

Hernandez-Sanabria, E., Grunert, O., Grunert, O., Robles-Aguilar, A. A., Hernandez-Sanabria, E., Schrey, S. D., Reheul, D., Van Labeke, M-C., Vlaeminck, S. E., Vandekerckhove, T. G. L., Ahmed, M., Monsieurs, P., Temperton, V. M., Boon, N. & Jablonowski, N. D. 2 Jul 2019 In : Scientific Reports. 9, p. 1-15 15 p., 9561

Research output: Contribution to journal › Article

Single and fractionated ionizing radiation induce alterations in endothelial connexin expression and channel function

Ramadan, R., Vromans, E., Anang, D. C., Decrock, E., Ahmed, M. M., Monsieurs, P., Baatout, S., Leybaert, L. & Aerts, A. 20 Jun 2019 In : Scientific Reports. 9, p. 1-16 16 p., 4643

Research output: Contribution to journal › Article

An active microbial community in Boom Clay pore water collected from piezometers impedes validating predictive modelling of ongoing geochemical processes

Mijnendonckx, K., Honty, M., Wang, L., Jacops, E., Provoost, A., Ahmed, M. M., Wouters, K., De Craen, M. & Leys, N. 17 May 2019 In : Applied Geochemistry. 106, p. 149-160

Research output: Contribution to journal › Article

Gene expression-based biodosimetry for radiological incidents: assessment of dose and time after radiation exposure

Macaeva, E., Ahmed, M., De Vos, W. H., Baatout, S. & Quintens, R. Jan 2019 In : International Journal of Radiation Biology. 95, 1, p. 64-75 12 p.

Research output: Contribution to journal › Article

Characterization of the bacterial communities on recent Icelandic volcanic deposits of different ages

Byloos, B., Monsieurs, P., Ahmed, M., Leys, N., Boon, N. & Van Houdt, R. 24 Sep 2018 In : BMC Microbiology. 11 p., 18:122

Research output: Contribution to journal › Article

Reconciliation between operational taxonomic units and species boundaries: DynamiC OTU cut-off

Ahmed, M., Vandamme, P., Props, R., Kerckhof, F-M., Leys, N., Boon, N., Raes, J. & Monsieurs, P. 1 Apr 2017 In : FEMS Microbiology Ecology. 93, p. 1-12 12 p.

Research output: Contribution to journal › Article

From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.: OCToPUS 16s Metagenomic pipeline

Ahmed, M. M., Njima, M., Leys, N., Raes, J. & Monsieurs, P. 1 Feb 2017 In : GigaScience. 6, 1-10, p. 1-10 10 p.

Research output: Contribution to journal › Article

Measuring the biodiversity of microbial communities by flow cytometry

Props, R., Monsieurs, P., Ahmed, M., Clement, L. & Boon, N. 1 Nov 2016 In : Methods in Ecology and Evolution. 7, 11, p. 1376-1385

Research output: Contribution to journal › Article